PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 260aa    MW: 29027.6 Da    PI: 6.9988
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-95882551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC144.62.3e-45731734101
      NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                  w++q   ie+a +f+nh++Plarikki+k+de+v+misaeaPv+++kace+fi eltlr+w h+ e+krrtl+k+di +a++ +d+fdfl+d+ prd+
  Pta009571  73 ICWANQlqgIEEAVEFRNHSFPLARIKKIMKSDEHVRMISAEAPVVFAKACEMFINELTLRAWSHTGETKRRTLQKNDIVEAINGADMFDFLIDNFPRDD 172
                5799998889****************************************************************************************98 PP

      NF-YC 101 l 101
                l
  Pta009571 173 L 173
                7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.54E-2861164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-3485155IPR009072Histone-fold
PfamPF008085.5E-2292155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDQQSWRQHM AVQNCGANAT FFQSPQILPT IPHGMFQQPP TSSNAHASAL SLSAHHNQLG  60
YHHQKQQQQE VEICWANQLQ GIEEAVEFRN HSFPLARIKK IMKSDEHVRM ISAEAPVVFA  120
KACEMFINEL TLRAWSHTGE TKRRTLQKND IVEAINGADM FDFLIDNFPR DDLKEDQLTN  180
LATPASSISV GSCSSNAGGV NSFPYYYLPN HHSAPHGVIV GKPVDPAIYM QQSGASVGYV  240
QNMLQRGFMY TEKSRSPNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C6e-35871701194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-35871701194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.159580.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284851.12e-62PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X4
RefseqXP_010659832.12e-62PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X3
RefseqXP_010659833.12e-62PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X4
SwissprotQ8LCG72e-54NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NTJ82e-97A9NTJ8_PICSI; Putative uncharacterized protein
STRINGVIT_14s0128g00250.t016e-62(Vitis vinifera)